［1］Qi, L; Ge, Y*; Xia, T; He, J-Z; Shen, C; Wang, J; Liu, Y-J. Rare earth oxide nanoparticles promote soil microbial antibiotic resistance by selectively enriching antibiotic resistance genes. Environmental Science: Nano, 2019, 6(2): 456-466.
［2］Li, Y; Chen, Z; He, J-Z; Wang, Q; Shen, C; Ge, Y*. Ectomycorrhizal fungi inoculation alleviates simulated acid rain effects on soil ammonia oxidizers and denitrifiers in Masson pine forest. Environmental Microbiology, 2019, 21(1): 299-313.
［3］Yue, Y; Shen, C; Ge, Y*. Biochar accelerates the removal of tetracyclines and their intermediates by altering soil properties. Journal of Hazardous Materials, 2019, 380: 120821
［4］Wang, J; Wang, J; Rhodes, G; He, J-Z; Ge, Y*. Adaptive responses of comammox Nitrospira and canonical ammonia oxidizers to long-term fertilizations. Science of the Total Environment, 2019, 668: 224-233.
［5］Sun, Y-Q; Wang, J; Sheng, C; He, J-Z; Ge, Y*. Plant evenness modulates the effect of plant richness on soil bacterial diversity. Science of the Total Environment, 2019, 662: 8-14.
［6］Shen, C; Ma, D; Sun, R; Zhang, B; Li, D; Ge, Y*. Long-term stacking coal promoted soil bacterial richness associated with increased soil organic matter in coal yards of power plants. Journal of Soils and Sediments, 2019, 19(10): 3442–3452.
［7］Shen, C; Shi, Y; Fan, k; He, J-S; Adams, JM; Ge, Y*; Chu, H*. Soil pH dominates elevational diversity pattern for bacteria in high elevation alkaline soils on the Tibetan Plateau. FEMS Microbiology Ecology, 2019, 95(2): fiz003.
［8］Ge, Y; Shen, C; Wang, Y; Sun, Y-Q; Schimel, JP; Gardea-Torresdey, JL; Holden, PA*. Carbonaceous nanomaterials have higher effects on soybean rhizosphere prokaryotic communities during the reproductive growth phase than during vegetative growth. Environmental Science & Technology, 2018, 52(11): 6636-6646.
［9］Ge, Y; Horst, AM; Kim, J; Priester, JH; Welch, ZS; Holden, PA. Toxicity of Manufactured Nanomaterials to Microorganisms. In Engineered Nanoparticles and the Environment: Biophysicochemical Processes and Biotoxicity; Xing, B; Vecitis, CD; Senesi, N; Eds. Wiley: 2016, Vol. 4.
［10］Ge, Y; Priester, JH; Mortimer, M; Chang, CH; Ji, Z; Schimel, JP; Holden, PA*. Long-term effects of multiwalled carbon nanotubes and graphene on microbial communities in dry soil. Environmental Science & Technology, 2016, 50(7): 3965-3974. (2014 IF: 5.330)
［11］Ge, Y; Priester, JH; Van De Werfhorst, LC; Walker, SL; Nisbet, RM; An, YJ; Schimel, JP; Gardea-Torresdey, JL; Holden, PA*. Soybean plants modify metal oxide nanoparticle effects on soil bacterial communities. Environmental Science & Technology, 2014, 48(22): 13489-13496.
［12］Ge, Y; Schimel, JP; Holden, PA*. Analysis of run-to-run variation of bar-coded pyrosequencing for evaluating bacterial community shifts and individual taxa dynamics. PLoS ONE, 2014, 9(6): e99414.
［13］Ge, Y; Priester, JH; Van De Werfhorst, LC; Schimel, JP; Holden, PA*. Potential mechanisms and environmental controls of TiO2 nanoparticle effects on soil bacterial communities. Environmental Science & Technology, 2013, 47(24): 14411-14417.
［14］Priester, JH; Ge, Y; Mielke, RE; Horst, AM; Moritz, SC; Espinosa, K; Gelb, J; Walker, SL; Nisbet, RM; An, Y-J; Schimel, JP; Palmer, RG; Hernandez-Viezcas, JA; Zhao, L; Gardea-Torresdey, JL; Holden, PA*. Soybean susceptibility to manufactured nanomaterials with evidence for food quality and soil fertility interruption. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109(37): 14734-14735 & E2451-E2456.
［15］Ge, Y; Schimel, JP; Holden, PA*. Identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles. Applied and Environmental Microbiology, 2012, 78(18): 6749-6758.
［16］Ge, Y; Schimel, JP; Holden, PA*. Evidence for negative effects of TiO2 and ZnO nanoparticles on soil bacterial communities. Environmental Science & Technology, 2011, 45(4): 1659-1664.
［17］Ge, Y; Chen, C*; Xu, Z; Oren, R; He, JZ*. The spatial factor, rather than elevated CO2, controls the soil bacterial community in a temperate forest ecosystem. Applied and Environmental Microbiology, 2010, 76(22): 7426-7436.
［18］Ge, Y; Chen, C*; Xu, Z; Eldridge, S; Chan, K; He, Y; He, JZ*. Carbon/nitrogen ratio as a major factor for predicting the effects of organic wastes on soil bacterial communities assessed by DNA-based molecular techniques. Environmental Science and Pollution Research, 2010, 17(3): 807-815.
［19］He, JZ#,*; Ge, Y# (#Equal contribution); Xu, Z; Chen, C. Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted trees analysis. Journal of Soils and Sediments, 2009, 9(6): 547-554.
［20］贺纪正*; 葛源. 土壤微生物生物地理学研究进展. 生态学报, 2008, 28(11): 5571-5582.
［21］Ge, Y; Zhang, JB; Zhang, LM; Yang, M; He, JZ*. Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China. Journal of Soils and Sediments, 2008, 8(1): 43-50.
［22］Ge, Y; He, JZ*; Zhu, YG; Zhang, JB; Xu, Z; Zhang, LM; Zheng, YM. Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies? ISME Journal, 2008, 2(3): 254-264.
［23］葛源; 贺纪正*; 郑袁明; 张丽梅; 朱永官. 稳定性同位素探测技术在微生物生态学研究中的应用. 生态学报, 2006, 26(5): 1574-1582.